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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179346383_179346716_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179346383 - 179346716
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAGAT
5'SS Class:
major
3'SS Sequence:
GTATTTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
AATATCTTAACT
Flanking Amino Acid:
GPLAAMLKPLSNQRRQRQLD
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.3
75.1
35.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
69.3
0.43
1.1
65.8
44.1
Minor 5ss
27.5
-2.6
3.3
38.5
46.5
Minor BPS
75.9
0.89
1.2
84.42
35.4

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000034373
179306343 - 179434860
128518