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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179346383_179347480_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179346383 - 179347480
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
GTATTTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
AATATCTTAACT
Flanking Amino Acid:
VYTESDGTFSSNQRRQRQLD
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
69.3
0.43
1.1
65.8
44.1
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
75.9
0.89
1.2
84.42
35.4

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045696
179306343 - 179434860
128518