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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179349633_179350030_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179349633 - 179350030
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATACCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
PEETNRRVKNVLITLYWLGR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.8
28.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.8
0.49
0.8
63.8
38.2
Minor 5ss
42
-0.9
3.2
60.9
43.8
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518