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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179377885_179397243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179377885 - 179397243
Intron Length:
19359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
NRLSTPIAGLDNINVFLKAC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518