About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179397314_179400181_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179397314 - 179400181
Intron Length:
2868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GATTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATGTAACA
Flanking Amino Acid:
AALENGVLLCDLINKIKPGI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.5
0.71
0.9
78
40.1
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
55.3
0.16
2.2
73.39
38.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000044917
179308196 - 179434860
126665