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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179441299_179443753_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179441299 - 179443753
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATGCATTGATC
Flanking Amino Acid:
VNVGGHLYELDGRKPFPINH
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
75.9
32.8
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
51.6
0.03
1.7
61.85
37.6

Associated Gene:

Gene:
UCHL3
Ensembl Gene ID:
ENSAPLG00000005020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032500
179439949 - 179482182
42234
ENSAPLT00000005193
179439949 - 179482182
42234