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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179469320_179481342_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179469320 - 179481342
Intron Length:
12023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTCATTTAATA
Flanking Amino Acid:
RWLPLEANPDFLKQLGIHPD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
66.6
39.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
29
-2.4
3.1
33.7
35
Minor BPS
64.1
0.44
1.4
72.27
33.1

Associated Gene:

Gene:
UCHL3
Ensembl Gene ID:
ENSAPLG00000005020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005193
179439949 - 179482182
42234