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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179486509_179486759_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179486509 - 179486759
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATCC
Flanking Amino Acid:
VLLARAVEALDVGGAADKIS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.3
0.88
0.7
84.9
29.9
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
52.1
0.05
1.7
63.5
42

Associated Gene:

Gene:
COMMD6
Ensembl Gene ID:
ENSAPLG00000005004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005170
179486460 - 179491061
4602