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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179486819_179487396_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179486819 - 179487396
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATGTTTTCAAAT
Flanking Amino Acid:
LIPQDFFAELCEQIIQHLNH
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.7
0.83
0.7
85.2
28.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
54.8
0.23
1.6
71.32
39.8

Associated Gene:

Gene:
COMMD6
Ensembl Gene ID:
ENSAPLG00000005004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005170
179486460 - 179491061
4602