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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179487463_179487622_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179487463 - 179487622
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATCTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTTATTACAT
Flanking Amino Acid:
PGVNTVELCRRLQTFGIEIS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.3
0.57
0.9
73.1
36.9
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
50
0.08
2
73.83
42.9

Associated Gene:

Gene:
COMMD6
Ensembl Gene ID:
ENSAPLG00000005004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005170
179486460 - 179491061
4602