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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179488732_179489737_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179488732 - 179489737
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATCTCTTTAATA
Flanking Amino Acid:
DVGNMATVGQFVDIKWKLGV
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.5
0.78
0.7
80
25.6
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
76.7
0.83
1.1
77.18
34.1

Associated Gene:

Gene:
COMMD6
Ensembl Gene ID:
ENSAPLG00000005004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005170
179486460 - 179491061
4602