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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179564691_179566118_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179564691 - 179566118
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTTCTTATTT
Flanking Amino Acid:
SEKNRTMLFQVGRFEVNLIS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
73.2
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.2
0.66
1
79.5
32.8
Minor 5ss
37.5
-1.4
2.9
50.7
45.7
Minor BPS
65
0.55
1.6
77.4
39.8

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342