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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179574909_179575706_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179574909 - 179575706
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
CTGTTCTTGACA
Flanking Amino Acid:
EQADIFERVQKMKPENDQEE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
75.5
0.57
1
72
38
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
71.4
0.67
1.2
73.38
39

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342