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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179575818_179576426_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179575818 - 179576426
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATGAA
U12 Branch Point Sequence:
TTCTTTTCAACA
Flanking Amino Acid:
THVHIGEAPSITSNSAIPEN
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
58
46.4
Major BPS
51.5
0.04
1.2
43.5
39.2
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
34.2
-1.8
3.5
47.8
47.8
Minor BPS
66
0.5
1.5
74.67
37.4

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342