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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179576547_179580096_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179576547 - 179580096
Intron Length:
3550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATG
Flanking Amino Acid:
TSSLENIFSRGANRMRGRLG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
78
29.6
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
53.4
-0
1.8
61.64
41.7

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342