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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179581437_179591727_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179581437 - 179591727
Intron Length:
10291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTACTTTGATC
Flanking Amino Acid:
LLRQSCVEPPSDGEGKKRTS
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.2
0.88
0.6
88
22
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
64.7
0.44
1.3
69.74
36.4

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342