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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179597113_179597465_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179597113 - 179597465
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
CTCTCTTTACAT
Flanking Amino Acid:
AQQHAILVDLGRTFPTHPYF
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
70.2
0.5
1
72.1
33
Major PPT
75.4
0.57
0.9
74.9
33.3
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
56.7
0.29
1.8
72.3
45

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342