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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179605132_179608253_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179605132 - 179608253
Intron Length:
3122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GATTTATTAAAA
Flanking Amino Acid:
QNMDLLEKLQVAHAKIQSLE
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.5
0.71
0.9
76.7
37.3
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
58
0.25
1.7
68.01
37.3

Associated Gene:

Gene:
TBC1D4
Ensembl Gene ID:
ENSAPLG00000004362
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004555
179529131 - 179608472
79342