Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179706358_179726932_F

Intron Information:

Intron Rank:

136883

Intron Class:

major

Intron Phase:

Intron Coordinates:

179706358 - 179726932

Intron Length:

20575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATTCAT

5'SS Class:

major

3'SS Sequence:

ATCCTTTCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTATCATTTATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

72.5

38.4

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

77.7

0.62

0.8

72.2

31.8

Minor 5ss

36.1

-1.6

47.2

42.5

Minor BPS

58.3

0.24

1.9

72.74

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035156

179705888 - 179727103

21216