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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179773179_179773881_F

Intron Information:

Intron Rank:
146095
Intron Class:
major
Intron Phase:
Intron Coordinates:
179773179 - 179773881
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTCCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86
0.81
0.8
80.5
36.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
83.7
1.14
1
92.07
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017976
179762510 - 179774268
11759