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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179818946_179819284_F

Intron Information:

Intron Rank:
124717
Intron Class:
major
Intron Phase:
Intron Coordinates:
179818946 - 179819284
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
CTGATCTCAGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGGTCTGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.8
0.31
0.9
59.6
36.7
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
53.7
-0
1.7
58.02
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017229
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034807
179818584 - 179832114
13531