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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179819345_179820851_F

Intron Information:

Intron Rank:
124720
Intron Class:
major
Intron Phase:
Intron Coordinates:
179819345 - 179820851
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATACTTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
87.3
0.84
0.7
82.2
29
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
53.6
0.19
1.7
70.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017229
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045444
179818584 - 179832114
13531