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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179819345_179822587_F

Intron Information:

Intron Rank:
124718
Intron Class:
major
Intron Phase:
Intron Coordinates:
179819345 - 179822587
Intron Length:
3243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.6
0.64
1
70.5
44.2
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
56.7
0.29
2
77.85
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017229
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034807
179818584 - 179832114
13531