About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179852625_179856788_R

Intron Information:

Intron Rank:
139295
Intron Class:
major
Intron Phase:
Intron Coordinates:
179852625 - 179856788
Intron Length:
4164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGGC
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
64.1
41.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.7
83.2
25.4
Minor 5ss
37.2
-1.4
3.4
52.5
44.7
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026158
179851942 - 179869200
17259