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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179852625_179859950_R

Intron Information:

Intron Rank:
139294
Intron Class:
major
Intron Phase:
Intron Coordinates:
179852625 - 179859950
Intron Length:
7326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.7
83.2
25.4
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025482
179851942 - 179860302
8361