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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179856515_179856788_R

Intron Information:

Intron Rank:
139299
Intron Class:
major
Intron Phase:
Intron Coordinates:
179856515 - 179856788
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGGC
5'SS Class:
major
3'SS Sequence:
ATTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
64.1
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
37.2
-1.4
3.4
52.5
44.7
Minor BPS
63.7
0.51
1.6
76.26
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048287
179855287 - 179869200
13914