Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179862768_179869008_R

Intron Information:

Intron Rank:

139298

Intron Class:

major

Intron Phase:

Intron Coordinates:

179862768 - 179869008

Intron Length:

6241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCAATC

5'SS Class:

major

3'SS Sequence:

TGCATATTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAA

U12 Branch Point Sequence:

ATTTTCTGCATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.2

69.9

41.1

Major BPS

70.6

0.51

0.9

61.4

36.2

Major PPT

77.2

0.61

0.9

73.5

40.8

Minor 5ss

42.2

-0.9

3.3

60.5

44.2

Minor BPS

0.09

1.9

70.02

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022414

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048287

179855287 - 179869200

13914

ENSAPLT00000026158

179851942 - 179869200

17259