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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179878804_179885122_R

Intron Information:

Intron Rank:
147037
Intron Class:
major
Intron Phase:
Intron Coordinates:
179878804 - 179885122
Intron Length:
6319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
TCATATTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.2
36.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78
0.63
0.9
73.3
36.6
Minor 5ss
33
-1.9
3
37.5
42.3
Minor BPS
64.8
0.44
1.5
73.86
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026399
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022517
179878540 - 179885222
6683