About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179882138_179885122_R

Intron Information:

Intron Rank:
147038
Intron Class:
major
Intron Phase:
Intron Coordinates:
179882138 - 179885122
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
TTCTACTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTACTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.2
36.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.2
0.72
0.8
73.6
36.6
Minor 5ss
33
-1.9
3
37.5
42.3
Minor BPS
70.2
0.71
1.7
88.35
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026399
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044683
179881985 - 179939110
57126