Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179889072_179889585_F

Intron Information:

Intron Rank:

134100

Intron Class:

major

Intron Phase:

Intron Coordinates:

179889072 - 179889585

Intron Length:

514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTACTTTTA

5'SS Class:

major

3'SS Sequence:

CTGTCTCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

CTCCTGTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.2

70.1

36.6

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

71.2

0.48

0.9

66.3

34.5

Minor 5ss

45.2

-0.5

Minor BPS

53.6

0.19

2.1

72.32

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022075

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017778

179888845 - 179893247

4403