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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179889848_179893127_F

Intron Information:

Intron Rank:
134101
Intron Class:
major
Intron Phase:
Intron Coordinates:
179889848 - 179893127
Intron Length:
3280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
AAGTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CAATGTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.1
79.9
36
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
70.8
0.47
0.9
63.2
38.5
Minor 5ss
46.1
-0.4
2.8
65.3
45.9
Minor BPS
49
0
2
66.02
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017778
179888845 - 179893247
4403