Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179967296_179969240_F

Intron Information:

Intron Rank:

142763

Intron Class:

major

Intron Phase:

Intron Coordinates:

179967296 - 179969240

Intron Length:

1945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGACTT

5'SS Class:

major

3'SS Sequence:

CATTTATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAATTTTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

69.2

41.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.3

0.77

0.8

81.4

34.8

Minor 5ss

39.2

-1.2

3.3

43.7

Minor BPS

67.1

0.4

1.3

64.67

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033293

179966667 - 179970334

3668