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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179985489_179988489_F

Intron Information:

Intron Rank:
140463
Intron Class:
major
Intron Phase:
Intron Coordinates:
179985489 - 179988489
Intron Length:
3001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TATGCAGTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
46.3
-0.3
2.3
63.74
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025593
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030869
179985007 - 179989274
4268