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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180117103_180141851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180117103 - 180141851
Intron Length:
24749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCACAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
CTTTCCACAACA
Flanking Amino Acid:
MPGKKVKSPNVHNYPDM
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
72.4
0.5
0.9
67.2
32.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
62.2
0.38
1.9
76.88
39.9

Associated Gene:

Gene:
KLF12
Ensembl Gene ID:
ENSAPLG00000030690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020709
180117082 - 180229597
112516