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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1801392_1809098_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1801392 - 1809098
Intron Length:
7707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
YLHCVNHAKQSGSLWGALPP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.5
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
29.4
-2.4
3.4
39.4
46.5
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
CHCHD3
Ensembl Gene ID:
ENSAPLG00000005618
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042299
1657693 - 1809286
151594