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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180142399_180159689_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180142399 - 180159689
Intron Length:
17291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTCATATTAATC
Flanking Amino Acid:
LLEDGRSHVKAQMDPRGLSP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.2
0.79
0.8
77
37.2
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
51.2
0.02
1.6
59.32
40.3

Associated Gene:

Gene:
KLF12
Ensembl Gene ID:
ENSAPLG00000030690
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045450
180141828 - 180230357
88530
ENSAPLT00000043416
180059987 - 180230357
170371
ENSAPLT00000029113
180059987 - 180230357
170371
ENSAPLT00000020709
180117082 - 180229597
112516