About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180273373_180274364_R

Intron Information:

Intron Rank:
130739
Intron Class:
major
Intron Phase:
Intron Coordinates:
180273373 - 180274364
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
ACTCAATCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
40.1
-0.7
2.2
58.67
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044284
180272757 - 180274849
2093