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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180380615_180382118_R

Intron Information:

Intron Rank:
146067
Intron Class:
major
Intron Phase:
Intron Coordinates:
180380615 - 180382118
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ACATACAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.12
0.8
80.2
30.6
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
82.6
0.73
0.8
76.8
32
Minor 5ss
29.2
-2.4
3.8
39.9
46.1
Minor BPS
42.9
-0.5
1.9
51.55
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034215
180379771 - 180389252
9482