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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180382267_180388497_R

Intron Information:

Intron Rank:
146068
Intron Class:
major
Intron Phase:
Intron Coordinates:
180382267 - 180388497
Intron Length:
6231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CCAGTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
78.9
0.65
0.8
72.7
32
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
44.3
-0.3
1.9
55.74
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034215
180379771 - 180389252
9482