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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180397965_180413089_F

Intron Information:

Intron Rank:
133011
Intron Class:
major
Intron Phase:
Intron Coordinates:
180397965 - 180413089
Intron Length:
15125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
AGCTTGTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
46.3
-0.2
2.4
66.06
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028927
180397115 - 180414598
17484