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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180411713_180413089_F

Intron Information:

Intron Rank:
133012
Intron Class:
major
Intron Phase:
Intron Coordinates:
180411713 - 180413089
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
AGCTTGTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
46.3
-0.2
2.4
66.06
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030882
180411506 - 180414598
3093