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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180471579_180472023_R

Intron Information:

Intron Rank:
153863
Intron Class:
major
Intron Phase:
Intron Coordinates:
180471579 - 180472023
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
CTAATGGGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTTCTCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
72.9
32.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
60.5
0.24
1.1
52.8
45.7
Minor 5ss
45
-0.5
2.9
59.2
40.9
Minor BPS
61.8
0.23
1.7
67.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030269
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044959
180470682 - 180472496
1815