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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180510323_180518949_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180510323 - 180518949
Intron Length:
8627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TATTACTGAATT
Flanking Amino Acid:
ERIAQLEKDVSLLNKEKTAL
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
79.8
35.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79
0.65
0.9
73
36
Minor 5ss
35.1
-1.7
2.7
42.1
44.6
Minor BPS
67.2
0.62
1.6
83.62
36.7

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892
ENSAPLT00000017310
180510085 - 180609867
99783
ENSAPLT00000004197
180488179 - 180609070
120892