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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180527727_180532884_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180527727 - 180532884
Intron Length:
5158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GACACCTTAATA
Flanking Amino Acid:
LDEIIMQTAEMEDEAEAERV
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
80
0.75
1
78.6
31
Major PPT
86.2
0.81
0.8
80.9
36.4
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
66.8
0.52
1.3
66.27
40

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004197
180488179 - 180609070
120892
ENSAPLT00000032272
180488179 - 180609070
120892
ENSAPLT00000017310
180510085 - 180609867
99783