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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180533036_180538750_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180533036 - 180538750
Intron Length:
5715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTC
Flanking Amino Acid:
ECEKYQRKLEVLTKEFYSLQ
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.9
71.5
38.2
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
65.1
0.45
1.8
79.59
35.6

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892
ENSAPLT00000017310
180510085 - 180609867
99783
ENSAPLT00000004197
180488179 - 180609070
120892