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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180538917_180579617_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180538917 - 180579617
Intron Length:
40701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTGCCAAAACT
Flanking Amino Acid:
ALRKYDQLLDQYRQMQLGTE
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
53.4
0.19
2.1
77.67
44.4

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892
ENSAPLT00000017310
180510085 - 180609867
99783
ENSAPLT00000004197
180488179 - 180609070
120892