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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180579717_180581789_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180579717 - 180581789
Intron Length:
2073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CCTAACAGAATA
Flanking Amino Acid:
TSKEMYERENRNLREARDNA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
76.5
34.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
33
-1.9
3
41.3
45.3
Minor BPS
42.9
-0.5
1.8
50.95
40.3

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017310
180510085 - 180609867
99783
ENSAPLT00000004197
180488179 - 180609070
120892
ENSAPLT00000032272
180488179 - 180609070
120892