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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180588921_180589473_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180588921 - 180589473
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
IWEALLFRTPSERDAFEHEL
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
80
0.75
1
78.6
31
Major PPT
84.3
0.77
0.9
81.1
35.2
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892