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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180589543_180590923_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180589543 - 180590923
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GGCTCATTCATT
Flanking Amino Acid:
YRQENYDKVKWVRYSGDRVA
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70
0.45
1
65
40.8
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
48.8
-0
2
66.54
44.1

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892