About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180607926_180608754_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180607926 - 180608754
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTGCATTT
Flanking Amino Acid:
DNLKVEYLTKIEELEEKLND
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
47.1
-0.1
2.3
75.55
42.1

Associated Gene:

Gene:
PIBF1
Ensembl Gene ID:
ENSAPLG00000004063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032272
180488179 - 180609070
120892
ENSAPLT00000017310
180510085 - 180609867
99783
ENSAPLT00000004197
180488179 - 180609070
120892